BA14 - Inflammation and thrombosis gene pathways and cardiovascular disease

Investigator Names and Contact Information

Alexander Reiner (apreiner@uw.edu)

Introduction/Intent

Cardiovascular disease (CVD) is now the leading cause of morbidity and mortality among women as well as men. Therefore, understanding the molecular basis of coronary heart disease (CHD) and stroke is of major public health importance. Vascular inflammation and thrombosis are key determinants of CHD and stroke risk. Yet, the specific genetic risk factors related to thrombosis and inflammation remain poorly characterized. Identification of novel genetic risk markers may allow targeting of men and women likely to benefit from additional anti-thrombotic or anti-inflammatory therapies such as long-term oral anticoagulation. Since female hormones are known to influence a variety of thrombosis and inflammatory mediators, identification of thrombosis and inflammation gene-hormone therapy (HRT) interactions on CVD risk may help to refine the indications for HRT use in post-menopausal women.

To identify genetic CVD risk factors, they ideally must be (1) comprehensively evaluated and replicated in multiple, large, well-characterized study populations using consistent data collection procedures and phenotype definitions, and (2) integrated with intermediate phenotypes according to relevant biologic pathways, as well as with additional sources of functional genomic information.

The main goal of the study is to identify and validate genetic variants that contribute to CVD risk, particularly the common (minor allele frequency ≥ 5%) low-penetrance, low-risk alleles that increase or decrease a person’s susceptibility to vascular inflammation, plaque rupture, and thrombosis. This will be accomplished by typing common variants in CVD genes using the Illumina CARE CVD55 SNP panel in a total of 2,500 CHD cases, 2,500 stroke cases and 2,500 controls from the WHI Observational Study and Hormone Trial. Genotyping for the same 55K CVD candidate gene variants are currently being performed in 9 other NHLBI-funded CVD cohort studies through the CARE project. The combined availability of genotype data and CVD clinical and intermediate phenotypes from several very large, prospective population-based cohorts allows us to efficiently accomplish our first main specific aims, which are:

  1. To identify and externally validate associations between common patterns of nucleotide variation in thrombosis and inflammation genes and (a) risk of incident clinical CVD events; (b) existing thrombosis and inflammation biomarker phenotypes that have been measured in WHI and other NHLBI cohorts.

  2. To further assess the biologic mechanism of any (validated) candidate gene SNP association by performing (a) combined genotype - intermediate phenotype - clinical CVD outcome (“Mendelian randomization”) analyses across WHI and available CARE cohorts; (b) candidate SNP genotype – gene expression and promoter analysis in silico and in vitro.

  3. The genetic determinants of CVD related to inflammation and thrombosis differ according to (a) hormone therapy; (b) the presence of other genetic variants that might affect risk by increasing or decreasing a person’s susceptibility to vascular inflammation and thrombosis.

Results/Findings See WHI Publications: 1215, 1508, 1795. WHI publications by study lists published WHI papers that have been generated by ancillary studies. A complete list of WHI papers is available in the Bibliography section of this website.

Related Papers

Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies

Andrew P. Morris et al., 2019/1 PubMed #30604766 MSID: 2300
Chronic kidney disease (CKD) affects ~10% of the global population, with considerable ethnic differences in prevalence and aetiology. We assemble genome-wide association studies of estimated glomerular filtration rate (eGFR), a measure of kidney function that defines CKD, in 312,468 individuals of diverse ancestry. We identify 127 distinct association signals with homogeneous effects on eGFR across ancestries and enrichment in genomic annotations including kidney-specific histone modifications. ...
Keywords: Genetic Factors; Exome Chip; Rare Variants; Kidney Traits
Related Studies: 224, BA14, M13, M24

The genetic architecture of hematological traits within and between populations

Approved Manuscript, Chen, Ming-Huei et al., 2019/11 MSID: 3222
Keywords: Blood Cell Traits; Hematologic Traits; Genome-Wide Association Study; Meta-Analysis; Association
Related Studies: 264, BA3, BA14, M13, W63

Exome chip analysis of P-wave indices

Approved Proposal, Weng, Lu-Chen et al., 2016/4 MSID: 3052
Keywords: Ecg; P-Wave Indices; Exome Chip; Genetic Epidemiology; Arrhythmia
Related Studies: 224, BA14, BA18, M13, M24, W63

Exome genotyping identifies pleiotropic variants associated with red blood cell traits

Nathalie Chami et al., 2016/6 PubMed #27346685 MSID: 2957
Red blood cell (RBC) traits are important heritable clinical biomarkers and modifiers of disease severity. To identify coding genetic variants associated with these traits, we conducted meta-analyses of seven RBC phenotypes in 130,273 multi-ethnic individuals from studies genotyped on an exome array. After conditional analyses and replication in 27,480 independent individuals, we identified 16 new RBC variants. We found low-frequency missense variants in MAP1A (rs55707100, minor allele frequency...
Related Studies: 224, BA3, BA14, M24

Platelet-related variants identified by exomechip meta-analysis in 157,293 individuals

John Eicher et al., 2016/6 PubMed #27346686 MSID: 2959
Platelet production, maintenance, and clearance are tightly controlled processes indicative of platelets' important roles in hemostasis and thrombosis. Platelets are common targets for primary and secondary prevention of several conditions. They are monitored clinically by complete blood counts, specifically with measurements of platelet count (PLT) and mean platelet volume (MPV). Identifying genetic effects on PLT and MPV can provide mechanistic insights into platelet biology and their role in ...
Related Studies: 224, BA3, BA14, M24

Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci

Chunyu Liu et al., 2016/10 PubMed #27618448 MSID: 2093
Meta-analyses of association results for blood pressure using exome-centric single-variant and gene-based tests identified 31 new loci in a discovery stage among 146,562 individuals, with follow-up and meta-analysis in 180,726 additional individuals (total n = 327,288). These blood pressure-associated loci are enriched for known variants for cardiometabolic traits. Associations were also observed for the aggregation of rare and low-frequency missense variants in three genes, NPR1, DBH, and PTPMT...
Related Studies: 224, BA14, M13, W63

Meta-analysis of dense genecentric association studies reveals common and uncommon variants associated with height

Matt Lanktree et al., 2010/12 PubMed #21194676 MSID: 1186
Height is a classic complex trait with common variants in a growing list of genes known to contribute to the phenotype. Using a genecentric genotyping array targeted toward cardiovascular-related loci, comprising 49,320 SNPs across approximately 2000 loci, we evaluated the association of common and uncommon SNPs with adult height in 114,223 individuals from 47 studies and six ethnicities. A total of 64 loci contained a SNP associated with height at array-wide significance (p < 2.4 × 10(-6)), wit...
Related Studies: BA14

Loci influencing blood pressure identified using a cardiovascular gene-centric array

Santhi Ganesh et al., 2013/1 PubMed #23303523 MSID: 1215
Blood pressure (BP) is a heritable determinant of risk for cardiovascular disease (CVD). To investigate genetic associations with systolic BP (SBP), diastolic BP (DBP), mean arterial pressure (MAP) and pulse pressure (PP), we genotyped ~50 000 single-nucleotide polymorphisms (SNPs) that capture variation in ~2100 candidate genes for cardiovascular phenotypes in 61 619 individuals of European ancestry from cohort studies in the USA and Europe. We identified novel associations between rs347591 and...
Keywords: Blood Pressure; Genetics; Ibc Array; Consortium; Hypertension
Related Studies: BA14

Causal effects of body mass index on cardiometabolic traits and events: a Mendelian randomization analysis

Michael V. Holmes et al., 2014/1 PubMed #24462370 MSID: 2121
Elevated body mass index (BMI) associates with cardiometabolic traits on observational analysis, yet the underlying causal relationships remain unclear. We conducted Mendelian randomization analyses by using a genetic score (GS) comprising 14 BMI-associated SNPs from a recent discovery analysis to investigate the causal role of BMI in cardiometabolic traits and events. We used eight population-based cohorts, including 34,538 European-descent individuals (4,407 type 2 diabetes (T2D), 6,073 corona...
Keywords: None Provided
Related Studies: BA14

Exome chip analysis of electrocardiographic and arrhythmic phenotypes

Approved Proposal, Sotoodehnia, Nona et al., 2014/4 MSID: 2425
Keywords: Ecg; Qt Interval; Exome Chip; Genetic Epidemiology; Arrhythmia
Related Studies: 224, BA14, M13, M24, W63

Naturally-occurring mutations that disrupt NPC1L1 function are associated with reduced risk for CHD and lower LDL cholesterol

Approved Proposal, Reiner, Alex et al., 2014/5 MSID: 2433
Keywords: Cholesterol; Ldl; Coronary Heart Disease; Genetics; Npc1l1; Exome
Related Studies: 224, 233, BA14, M6, M13

Rare coding variants and X-linked loci associated with age at menarche

Kathryn Lunetta et al., 2015/8 PubMed #26239645 MSID: 2310
More than 100 loci have been identified for age at menarche by genome-wide association studies; however, collectively these explain only ~3% of the trait variance. Here we test two overlooked sources of variation in 192,974 European ancestry women: low-frequency protein-coding variants and X-chromosome variants. Five missense/nonsense variants (in ALMS1/LAMB2/TNRC6A/TACR3/PRKAG1) are associated with age at menarche (minor allele frequencies 0.08-4.6%; effect sizes 0.08-1.25 years per allele; P<5...
Keywords: Genetic Factors; Exome Chip; Rare Variants; Kidney Traits
Related Studies: 224, BA14, M13, M24

Exome chip analysis of electrocardiographic and arrhythmic phenotypes (b)

Approved Proposal, Sotoodehnia, Nona et al., 2014/7 MSID: 2481
Keywords: Ecg; Qt Interval; Jt Interval; Exome Chip; Genetic Epidemiology; Arrhythmia
Related Studies: 224, BA14, BA18, M13, M24, W63

Meta-analysis of rare and common exome chip variants identifies S1PR4 and other loci influencing blood cell traits

Alex Reiner et al., 2016/7 PubMed #27399967 MSID: 2486
Abstract Hematologic measures such as hematocrit and white blood cell (WBC) count are heritable and clinically relevant. We analyzed erythrocyte and WBC phenotypes in 52,531 individuals (37,775 of European ancestry, 11,589 African Americans, and 3,167 Hispanic Americans) from 16 population-based cohorts with Illumina HumanExome BeadChip genotypes. We then performed replication analyses of new discoveries in 18,018 European-American women and 5,261 Han Chinese. We identified and replicated four n...
Keywords: Genetic Factors; Exome Chip; Rare Variants; Hemoglobin; Hematocrit
Related Studies: 224, BA14, M13, M24, W63

Candidate gene analysis of gall bladder disease in WHI using the IBC genotyping platform

Approved Proposal, Keating, Brendan et al., 2010/6 MSID: 1251
Keywords: Gallbladder; Genetics; Ibc Array; Consortium; Cholelilthiasis
Related Studies: BA14

C-reactive protein and coronary heart disease: test of causality by Mendelian randomization analysis

Approved Proposal, undefined et al., 2010/6 MSID: 1252
Keywords: Crp; Chd; Genetics; Ibc Array; Consortium
Related Studies: BA14

Exome-wide association study for coronary heart disease

Approved Manuscript, Reiner, Alex et al., 2015/3 MSID: 2629
Keywords: Coronary Heart Disease; Genetics; Exome; Cardiovascular Disease; Myocardial Infarction
Related Studies: BA14, M24

Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair

Felix Day et al., 2015/9 PubMed #26414677 MSID: 2633
Menopause timing has a substantial impact on infertility and risk of disease, including breast cancer, but the underlying mechanisms are poorly understood. We report a dual strategy in ~70,000 women to identify common and low-frequency protein-coding variation associated with age at natural menopause (ANM). We identified 44 regions with common variants, including two regions harboring additional rare missense alleles of large effect. We found enrichment of signals in or near genes involved in de...
Related Studies: 224, BA14, M13, M24

Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation

Ingrid E. Christophersen et al., 2017/6 PubMed #28416818 MSID: 2176
Atrial fibrillation affects more than 33 million people worldwide and increases the risk of stroke, heart failure, and death. Fourteen genetic loci have been associated with atrial fibrillation in European and Asian ancestry groups. To further define the genetic basis of atrial fibrillation, we performed large-scale, trans-ancestry meta-analyses of common and rare variant association studies. The genome-wide association studies (GWAS) included 17,931 individuals with atrial fibrillation and 115,...
Keywords: Atrial Fibrillation; Rare Variant; Exome Chip
Related Studies: 224, 233, BA14, BA18, M12, M24

Meta-analysis of IBC array studies for type-2 diabetes related phenotypes

Approved Proposal, Keating, Brendan et al., 2010/6 MSID: 1216
Keywords: Type 2 Diabetes; Genome-Wide; Ibc Array; Meta-Analysis; Bmi; Genetics
Related Studies: BA14

The association of SNPs in 2,100 cardiovascular candidate genes with age at menopause

Approved Proposal, Reiner, Alex et al., 2011/11 MSID: 1626
Keywords: Menopause; Genome-Wide Association; Common Variants
Related Studies: BA14

Association of mitochondrial variants with blood pressure and kidney traits

Approved Proposal, Franceschini, Nora et al., 2014/4 MSID: 2408
Keywords: Genetic Factors; Mitochondrial Variants; Blood Pressure; Kidney Traits
Related Studies: 224, BA14, M13, W63

Gene-centric meta-analyses of 108,912 individuals confirm known body mass index loci and reveal three novel signals

Yiran Guo et al., 2012/9 PubMed #23001569 MSID: 1795
Recent genetic association studies have made progress in uncovering components of the genetic architecture of the body mass index (BMI). We used the ITMAT-Broad-Candidate Gene Association Resource (CARe) (IBC) array comprising up to 49 320 single nucleotide polymorphisms (SNPs) across ~2100 metabolic and cardiovascular-related loci to genotype up to 108 912 individuals of European ancestry (EA), African-Americans, Hispanics and East Asians, from 46 studies, to provide additional insight into SNP...
Keywords: None Provided
Related Studies: BA14

Gene-centric meta-analyses for central adiposity traits in up to 57 412 individuals of European descent confirm known loci and reveal several novel associations

Sachiko Yoneyama et al., 2013/12 PubMed #24345515 MSID: 2182
Waist circumference (WC) and waist-to-hip ratio (WHR) are surrogate measures of central adiposity that are associated with adverse cardiovascular events, type 2 diabetes and cancer independent of body mass index (BMI). WC and WHR are highly heritable with multiple susceptibility loci identified to date. We assessed the association between SNPs and BMI-adjusted WC and WHR and unadjusted WC in up to 57 412 individuals of European descent from 22 cohorts collaborating with the NHLBI's Candidate Gen...
Related Studies: BA14

Exome chip analysis of electrocardiographic and arrhythmic phenotypes (QRS interval)

Approved Proposal, Jamshidi, Yalda et al., 2014/8 MSID: 2509
Keywords: Electrocardiographic Traits; Qrs Interval; Exome Chip; Genetic Epidemiology; Arrhythmia
Related Studies: 224, BA14, BA18, M13, M24, W63

Over 60 rare variants associated with blood pressure regulation in meta-analysis of ~1.3 million individuals

Approved Manuscript, Surendran, Praveen et al., 2019/2 MSID: 3843
Related Studies: 224, BA14, M13, W63

Gene-centric meta-analysis of lipid traits in African, East Asian and Hispanic populations

Clara Elbers et al., 2012/12 PubMed #23236364 MSID: 3689
Meta-analyses of European populations has successfully identified genetic variants in over 100 loci associated with lipid levels, but our knowledge in other ethnicities remains limited. To address this, we performed dense genotyping of ~2,000 candidate genes in 7,657 African Americans, 1,315 Hispanics and 841 East Asians, using the IBC array, a custom ~50,000 SNP genotyping array. Meta-analyses confirmed 16 lipid loci previously established in European populations at genome-wide significance lev...
Related Studies: BA14

Common and exonic variants associated with C-reactive protein

Approved Proposal, Pankratz, Nathan et al., 2012/9 MSID: 1919
Keywords: Genetic Factors; Exome Chip; Rare Variants; Inflammation; Inflammatory Biomarkers; Crp; Il6; Icam1; Lppla2
Related Studies: 224, BA14, M13, M24, W63

Common and exonic variants associated with IL-6

Approved Proposal, Pankratz, Nathan et al., 2012/9 MSID: 1920
Keywords: Genetic Factors; Exome Chip; Rare Variants; Inflammation; Inflammatory Biomarkers; Crp; Il6; Icam1; Lppla2
Related Studies: 224, BA14, M13, M24, W63

Common and exonic variants associated with Lp-PLA2

Approved Proposal, Pankratz, Nathan et al., 2012/9 MSID: 1921
Keywords: Inflammatory Biomarkers And Exome Chip Data
Related Studies: 224, BA14, M13, M24, W63

Adult height, coronary heart disease and stroke: a multi-locus Mendelian randomisation meta-analysis

Eveline Nuesch et al., 2016/12 PubMed #25979724 MSID: 2391
Background: We investigated causal effect of completed growth, measured by adult height, on coronary heart disease (CHD), stroke and cardiovascular traits, using instrumental variable (IV) Mendelian randomization meta-analysis. Methods: We developed an allele score based on 69 single nucleotide polymorphisms (SNPs) associated with adult height, identified by the IBCCardioChip, and used it for IV analysis against cardiovascular risk factors and events in 21 studies and 60 028 participants. IV ana...
Related Studies: BA14

Inflammation and stress-related candidate genes, plasma interleukin-6 levels, and longevity in older adults

Jeremy D. Walston et al., 2009/5 PubMed #19249341 MSID: 3686
Interleukin-6 (IL-6) is an inflammatory cytokine that influences the development of inflammatory and aging-related disorders and ultimately longevity. In order to study the influence of variants in genes that regulate inflammatory response on IL-6 levels and longevity, we screened a panel of 477 tag SNPs across 87 candidate genes in >5000 older participants from the population-based Cardiovascular Health Study (CHS). Baseline plasma IL-6 concentration was first confirmed as a strong predictor of...
Related Studies: BA14

Large-scale exome-wide association analysis identifies loci for white blood cell traits and pleiotropy with immune-mediated diseases

Salman Tajuddin et al., 2016/7 PubMed #27346689 MSID: 2958
White blood cells play diverse roles in innate and adaptive immunity. Genetic association analyses of phenotypic variation in circulating white blood cell (WBC) counts from large samples of otherwise healthy individuals can provide insights into genes and biologic pathways involved in production, differentiation, or clearance of particular WBC lineages (myeloid, lymphoid) and also potentially inform the genetic basis of autoimmune, allergic, and blood diseases. We performed an exome array-based ...
Related Studies: 224, BA3, BA14, M24

Gene-centric meta-analysis in 87,736 individuals of European ancestry identifies multiple blood-pressure related loci

Vinicius Tragante et al., 2014/2 PubMed #24560520 MSID: 2206
Blood pressure (BP) is a heritable risk factor for cardiovascular disease. To investigate genetic associations with systolic BP (SBP), diastolic BP (DBP), mean arterial pressure (MAP), and pulse pressure (PP), we genotyped ~50,000 SNPs in up to 87,736 individuals of European ancestry and combined these in a meta-analysis. We replicated findings in an independent set of 68,368 individuals of European ancestry. Our analyses identified 11 previously undescribed associations in independent loci cont...
Keywords: Genes; Meta-Analysis; Blood Pressure; European Ancestry
Related Studies: BA14

Discovery of novel heart rate-associated loci using the Exome Chip

Marten Van den berg et al., 2017/4 PubMed #28379579 MSID: 2531
Background Resting heart rate is a heritable trait, and an increase in heart rate is associated with increased mortality risk. GWAS analyses have found loci associated with resting heart rate, at the time of our study these loci explained 0.9% of the variation.Aim To discover new genetic loci associated with heart rate from Exome Chip meta-analyses.Methods Heart rate was measured from either elecrtrocardiograms or pulse recordings. We meta-analysed heart rate association results from 104,452 Eur...
Keywords: Ecg; Rr Interval; Heart Rate; Exome Chip; Genetic Epidemiology; Arrhythmia
Related Studies: 224, BA14, BA18, M13, M24, W63

Mendelian randomization of blood lipids for coronary heart disease

Michael V. Holmes et al., 2014/1 PubMed #24474739 MSID: 2200
To investigate the causal role of high-density lipoprotein cholesterol (HDL-C) and triglycerides in coronary heart disease (CHD) using multiple instrumental variables for Mendelian randomization.We developed weighted allele scores based on single nucleotide polymorphisms (SNPs) with established associations with HDL-C, triglycerides, and low-density lipoprotein cholesterol (LDL-C). For each trait, we constructed two scores. The first was unrestricted, including all independent SNPs associated wi...
Related Studies: BA14

Common and rare coding genetic variation underlying the electrocardiographic PR interval

Honghuang Lin et al., 2018/5 PubMed #29748316 MSID: 2529
BACKGROUND: Electrical conduction from the cardiac sinoatrial node to the ventricles is critical for normal heart function. Genome-wide association studies have identified more than a dozen common genetic loci that are associated with PR interval. However, it is unclear whether rare and low-frequency variants also contribute to PR interval heritability. METHODS: We performed large-scale meta-analyses of the PR interval that included 83 367 participants of European ancestry and 9436 of African an...
Keywords: Electrocardiographic Traits; Pr Interval; Exome Chip; Genetic Epidemiology; Arrhythmia
Related Studies: 224, BA14, BA18, M13, M24

A large-scale multi-ancestry genome-wide study accounting for smoking behavior identifies multiple significant loci for blood pressure

Yun Ju Sung et al., 2018/3 PubMed #29455858 MSID: 1778
Genome-wide association analysis advanced understanding of blood pressure (BP), a major risk factor for vascular conditions such as coronary heart disease and stroke. Accounting for smoking behavior may help identify BP loci and extend our knowledge of its genetic architecture. We performed genome-wide association meta-analyses of systolic and diastolic BP incorporating gene-smoking interactions in 610,091 individuals. Stage 1 analysis examined ~18.8 million SNPs and small insertion/deletion var...
Keywords: Lipids; Blood Pressure; Gene-Environment; Lifestyle; Genetics; Gwas
Related Studies: BA14, M5, M13

Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci.

Folkert Asselbergs et al., 2012/10 PubMed #23063622 MSID: 1794
Genome-wide association studies (GWASs) have identified many SNPs underlying variations in plasma-lipid levels. We explore whether additional loci associated with plasma-lipid phenotypes, such as high-density lipoprotein cholesterol (HDL-C), low-density lipoprotein cholesterol (LDL-C), total cholesterol (TC), and triglycerides (TGs), can be identified by a dense gene-centric approach. Our meta-analysis of 32 studies in 66,240 individuals of European ancestry was based on the custom ~50,000 SNP g...
Keywords: None Provided
Related Studies: BA14

HMG-coenzyme A reductase inhibition, type 2 diabetes, and bodyweight: evidence from genetic analysis and randomised trials.

Daniel Swerdlow et al., 2014/9 PubMed #25262344 MSID: 1992
BACKGROUND: Statins increase the risk of new-onset type 2 diabetes mellitus. We aimed to assess whether this increase in risk is a consequence of inhibition of 3-hydroxy-3-methylglutaryl-CoA reductase (HMGCR), the intended drug target. METHODS: We used single nucleotide polymorphisms in the HMGCR gene, rs17238484 (for the main analysis) and rs12916 (for a subsidiary analysis) as proxies for HMGCR inhibition by statins. We examined associations of these variants with plasma lipid, glucose, and in...
Keywords: None Provided
Related Studies: BA14

Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data

Michael V. Holmes et al., 2014/7 PubMed #25011450 MSID: 2111
OBJECTIVE: To use the rs1229984 variant in the alcohol dehydrogenase 1B gene (ADH1B) as an instrument to investigate the causal role of alcohol in cardiovascular disease. DESIGN: Mendelian randomisation meta-analysis of 56 epidemiological studies. PARTICIPANTS: 261 991 individuals of European descent, including 20 259 coronary heart disease cases and 10 164 stroke events. Data were available on ADH1B rs1229984 variant, alcohol phenotypes, and cardiovascular biomarkers. MAIN OUTCOME MEASURES: Odd...
Related Studies: BA14

SOS2 and ACP1 loci Identified through large-scale exome chip analysis regulate kidney development and function

Man Li et al., 2017/3 PubMed #27920155 MSID: 2900
Genome-wide association studies have identified >50 common variants associated with kidney function, but these variants do not fully explain the variation in eGFR. We performed a two-stage meta-analysis of associations between genotypes from the Illumina exome array and eGFR on the basis of serum creatinine (eGFRcrea) among participants of European ancestry from the CKDGen Consortium (nStage1: 111,666; nStage2: 48,343). In single-variant analyses, we identified single nucleotide polymorphisms at...
Keywords: Human Genetics; Kidney Development; Renal Function
Related Studies: 224, BA14, M13, M24

A multi-ancestry genome-wide study incorporating gene-smoking interactions identifies multiple new loci for pulse pressure and mean arterial pressure

Yun Ju Sung et al., 2019/4 PubMed #31127295 MSID: 3620
Elevated blood pressure (BP), a leading cause of global morbidity and mortality, is influenced by both genetic and lifestyle factors. Cigarette smoking is one such lifestyle factor. Across five ancestries, we performed a genome-wide gene-smoking interaction study of mean arterial pressure (MAP) and pulse pressure (PP) in 129 913 individuals in stage 1 and follow-up analysis in 480 178 additional individuals in stage 2. We report here 136 loci significantly associated with MAP and/or PP. Of these...
Related Studies: BA14, M5, M13

The interleukin-6 receptor as a target for prevention of coronary heart disease: a mendelian randomisation analysis

Daniel Swerdlow et al., 2012/3 PubMed #22421340 MSID: 1508
A high circulating concentration of interleukin 6 is associated with increased risk of coronary heart disease. Blockade of the interleukin-6 receptor (IL6R) with a monoclonal antibody (tocilizumab) licensed for treatment of rheumatoid arthritis reduces systemic and articular inflammation. However, whether IL6R blockade also reduces risk of coronary heart disease is unknown.Applying the mendelian randomisation principle, we used single nucleotide polymorphisms (SNPs) in the gene IL6R to evaluate ...
Related Studies: BA14

Trans-ethnic fine mapping highlights kidney function genes linked to salt sensitivity

Anubha Mahajan et al., 2016/9 PubMed #27588450 MSID: 2920
We analyzed genome-wide association studies (GWASs), including data from 71,638 individuals from four ancestries, for estimated glomerular filtration rate (eGFR), a measure of kidney function used to define chronic kidney disease (CKD). We identified 20 loci attaining genome-wide-significant evidence of association (p < 5 × 10(-8)) with kidney function and highlighted that allelic effects on eGFR at lead SNPs are homogeneous across ancestries. We leveraged differences in the pattern of linkage d...
Related Studies: 224, BA14, M13, M24

The effect of phenotypic outliers and non-normality on rare-variant association testing

Paul Auer et al., 2016/1 PubMed #26733287 MSID: 2894
Abstract Rare-variant association studies (RVAS) have made important contributions to human complex trait genetics. These studies rely on specialized statistical methods for analyzing rare-variant associations, both individually and in aggregate. We investigated the impact that phenotypic outliers and non-normality have on the performance of rare-variant association testing procedures. Ignoring outliers or non-normality can significantly inflate Type I error rates. We found that rank-based inver...
Keywords: None Provided
Related Studies: 224, BA3, BA14, M13, M24, W63

New blood pressure-associated loci identified in meta-analyses of 475,000 individuals

Aldi Kraja et al., 2017/10 PubMed #29030403 MSID: 3324
BACKGROUND: Genome-wide association studies have recently identified >400 loci that harbor DNA sequence variants that influence blood pressure (BP). Our earlier studies identified and validated 56 single nucleotide variants (SNVs) associated with BP from meta-analyses of exome chip genotype data. An additional 100 variants yielded suggestive evidence of association. METHODS AND RESULTS: Here, we augment the sample with 140 886 European individuals from the UK Biobank, in whom 77 of the 100 sugge...
Keywords: Blood Pressure; Exome; Genetics; Genotype; Sample Size
Related Studies: 224, BA14, M13, W63

Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity

Valerie Turcot et al., 2018/1 PubMed #29273807 MSID: 3337
Genome-wide association studies (GWAS) have identified >250 loci for body mass index (BMI), implicating pathways related to neuronal biology. Most GWAS loci represent clusters of common, noncoding variants from which pinpointing causal genes remains challenging. Here we combined data from 718,734 individuals to discover rare and low-frequency (minor allele frequency (MAF) < 5%) coding variants associated with BMI. We identified 14 coding variants in 13 genes, of which 8 variants were in genes (Z...
Related Studies: 224, BA14, BA18, M13, W63, W66

Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci

A. Mesut Erzurumluoglu et al., 2019/1 PubMed #30617275 MSID: 2109
Smoking is a major heritable and modifiable risk factor for many diseases, including cancer, common respiratory disorders and cardiovascular diseases. Fourteen genetic loci have previously been associated with smoking behaviour-related traits. We tested up to 235,116 single nucleotide variants (SNVs) on the exome-array for association with smoking initiation, cigarettes per day, pack-years, and smoking cessation in a fixed effects meta-analysis of up to 61 studies (up to 346,813 participants). I...
Keywords: Smoking; Lung Cancer; Single Nucleotide Polymorphism (Snp); Rs1051730; Lung Cancer Disparities; Gene By Environment Interactions
Related Studies: 224, BA14, BA18, M13, M24