This document can be used to prepare or evaluate feasibility of ancillary study proposals and paper proposals, but is NOT intended for publication.

dbGaP Availability

File Name	Data as of	Population	Data collected	One row per	Rows
dbgap_availability_inv.dat	2/19/2023	CT+OS	Baseline, Main, Ext1, Ext2	Participant	39,347

See the GWAS Data page for more details

ID - WHI Participant Common ID

Col 1

N	Missing	Min	Max	Mean	StdDev
39,347	0	100,004	299,997	199,947.99	57,763.395

GWAS_OVERALL - Any imputed GWAS data available on dbGaP

Col 2

Value	Description	N	%
0	No	9,476	24.1
1	Yes	29,813	75.8
	Missing	58	0.1%

METABOCHIP_OVERALL - Any metabochip data available on dbGaP

Col 3

Value	Description	N	%
0	No	24,465	62.2
1	Yes	14,824	37.7
	Missing	58	0.1%

GWAS_GARNET - Imputed GWAS data available from the GARNET study (M13)

Col 4

Value	Description	N	%
0	No	0	0
1	Yes	4,883	12.4
	Missing	34,464	87.6%

GWAS_GECCOINITIALGWAS - Imputed GWAS data available from the initial GECCO GWAS study (AS224)

Col 5

Value	Description	N	%
0	No	0	0
1	Yes	478	1.2
	Missing	38,869	98.8%

GWAS_GECCOCYTOSNP - Imputed GWAS data available from the GECCO CytoSNP (AS224)

Col 6

Value	Description	N	%
0	No	0	0
1	Yes	2,015	5.1
	Missing	37,332	94.9%

GWAS_HIPFX - Imputed GWAS data available from the HIPFX study (BA03/BA18)

Col 7

Value	Description	N	%
0	No	0	0
1	Yes	3,690	9.4
	Missing	35,657	90.6%

GWAS_MOPMAP - Imputed GWAS data available from the MOPMAP study (AS264)

Col 8

Value	Description	N	%
0	No	0	0
1	Yes	3,069	7.8
	Missing	36,278	92.2%

GWAS_SHARE - Imputed GWAS data available from the SHARe study (M5)

Col 9

Value	Description	N	%
0	No	0	0
1	Yes	11,992	30.5
	Missing	27,355	69.5%

GWAS_WHIMSPLUS - Imputed GWAS data available from WHIMS+ (W63).

Col 10

Usage Notes:

Includes a subset of WHIMS participants along with some non-WHIMS European-American HT participants.

Value	Description	N	%
0	No	0	0
1	Yes	5,687	14.5
	Missing	33,660	85.5%

METABOCHIP_PILOT - Metabochip data available from the PAGE Pilot study (M6)

Col 11

Value	Description	N	%
0	No	0	0
1	Yes	2,129	5.4
	Missing	37,218	94.6%

METABOCHIP_YR34 - Metabochip data available from the PAGE study, Years 3-4 (M6)

Col 12

Value	Description	N	%
0	No	0	0
1	Yes	12,695	32.3
	Missing	26,652	67.7%

ESP - Exome Sequencing Project data available (M24)

Col 13

Value	Description	N	%
0	No	0	0
1	Yes	1,927	4.9
	Missing	37,420	95.1%

GWAS_AFFYMATRIX_6 - GWAS done on Affymatrix 6.0

Col 14

Value	Description	N	%
0	No	0	0
1	Yes	11,992	30.5
	Missing	27,355	69.5%

GWAS_AFFYMATRIX_GENETITAN - GWAS done on Affymatrix GeneTitan

Col 15

Value	Description	N	%
0	No	0	0
1	Yes	3,069	7.8
	Missing	36,278	92.2%

GWAS_ILLUMINA_300K - GWAS done on Illumina 300K

Col 16

Value	Description	N	%
0	No	0	0
1	Yes	2,015	5.1
	Missing	37,332	94.9%

GWAS_ILLUMINA_550K - GWAS done on Illumina 550K

Col 17

Value	Description	N	%
0	No	0	0
1	Yes	2,217	5.6
	Missing	37,130	94.4%

GWAS_ILLUMINA_610K - GWAS done on Illumina 610K

Col 18

Value	Description	N	%
0	No	0	0
1	Yes	1,951	5
	Missing	37,396	95%

GWAS_ILL_HUMANOMNI1_QUAD_V1 - GWAS done on Illumina HumanOmni 1 Quad V1.0

Col 19

Value	Description	N	%
0	No	0	0
1	Yes	4,883	12.4
	Missing	34,464	87.6%

GWAS_ILL_OMNIEXPRESS_PLUS_V1 - GWAS done on Illumina OmniExpress + Exome V1.0

Col 20

Value	Description	N	%
0	No	0	0
1	Yes	5,687	14.5
	Missing	33,660	85.5%

GARNET_QCSAMPLE - SHARe samples done in GARNET as QC (M13)

Col 21

Usage Notes:

African Americans with SHARe GWAS which were genotyped in GARNET as QC measure.

Value	Description	N	%
0	No	4,697	11.9
1	Yes	192	0.5
	Missing	34,458	87.6%

GARNET_MI_CASE - MI case/control status for GARNET (M13)

Col 22

Value	Description	N	%
0	No	2,345	6
1	Yes	592	1.5
	Missing	36,410	92.5%

GARNET_STROKE_CASE - Stroke case/control status for GARNET (M13)

Col 23

Value	Description	N	%
0	No	2,343	6
1	Yes	426	1.1
	Missing	36,578	93%

GARNET_VTE_CASE - VTE case/control status for GARNET (M13)

Col 24

Value	Description	N	%
0	No	2,345	6
1	Yes	363	0.9
	Missing	36,639	93.1%

GARNET_T2D_CASE - Type 2 Diabetes case/control status for GARNET (M13)

Col 25

Value	Description	N	%
0	No	2,344	6
1	Yes	1,152	2.9
	Missing	35,851	91.1%

GARNET_ALLCASES - Case for any outcome in GARNET (M13)

Col 26

Value	Description	N	%
0	No	2,342	6
1	Yes	2,356	6
	Missing	34,649	88.1%

GWAS_GECCO_CASE - GWAS case/control status for GECCO (AS224)

Col 27

Value	Description	N	%
0	No	1,089	2.8
1	Yes	1,404	3.6
	Missing	36,854	93.7%

GWAS_HIPFX_CASE - GWAS case/control status for HIPFX (BA03/18)

Col 28

Value	Description	N	%
0	No	1,761	4.5
1	Yes	1,929	4.9
	Missing	35,657	90.6%

GARNET_GENOTYPED - Genotypes for GARNET (M13)

Col 29

Value	Description	N	%
0	No	34,453	87.6
1	Yes	4,894	12.4

SHARE_GENOTYPED - Genotypes for SHARe (M5)

Col 30

Value	Description	N	%
0	No	27,340	69.5
1	Yes	12,007	30.5

WHIMS_PLUS_GENOTYPED - Genotypes for WHIMS Plus

Col 31

Value	Description	N	%
0	No	33,607	85.4
1	Yes	5,740	14.6